Selected publications
This page will be updated periodically with some selected publications.
For a full list of publications see Christina Boucher’s Google Scholar.
MONI: A Pangenomics Index for Finding MEMs
Rossi, M., Oliva, M., Langmead, B. Gagie, T., and Boucher, C. Mini: a pangenomics index for finding MEMs. To appear at RECOMB 2021 and Journal of Computational Biology.
Fast and efficient rmap assembly using the bi-labelled de bruijn graph
Mukherjee, K., Rossi, M., Salmela, L. et al. Fast and efficient Rmap assembly using the Bi-labelled de Bruijn graph. Algorithms Mol Biol 16, 6 (2021). https://doi.org/10.1186/s13015-021-00182-9
data structures based on k-mers for querying large collections of sequencing data
Marchet, C., Boucher, C., Puglisi, S., et al. Data structures based on k-mers for querying large collections of sequencing data. Genome Research, 2021, 31:1-12.
metagenome SNP calling via read-colored de bruijn graphs
Metagenome SNP calling via read-colored de Bruijn graphs
Bahar Alipanahi, Martin D Muggli, Musa Jundi, Noelle R Noyes, Christina Boucher Bioinformatics, Volume 36, Issue 22-23, 1 December 2020, Pages 5275–5281, https://doi.org/10.1093/bioinformatics/btaa081
